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Theses/Dissertations from 2021

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The Role of Excited States in Determining β-lactamase Function and Bacterial Fitness, Catherine Rae Knoverek

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Influence of Aging and Cerebrovascular Disease on Neuroimaging Measures of Alzheimer Disease, Lauren Nicole Koenig

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Gut Reactions: Quantitative Predictions of the Responses of Human Gut Microbiota to Medical Interventions, Amy Elizabeth Langdon

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Stem Cell Models to Study the Regulation of Human Cortical Development and Its Disruption in Neurodevelopmental Disorders, Emily Megan Alexandra Lewis

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Identify Genetic and Epigenetic Abnormalities Associated with Therapeutic Vulnerability in Human Cancers, Wen-Wei Liang

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Regulation of transcription factor binding specificity: from binding motifs to local DNA context, Jiayue Liu

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Vestibulospinal circuit in the larval zebrafish, Zhikai Liu

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Type I Interferon Regulation of Chikungunya Virus Pathogenesis, Marissa Christine Locke

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Regulation, Architecture, and Function of the Type VI Secretion System of Acinetobacter baumannii, Juvenal Lopez

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The Phylogeography of Rare Central Tennessee Glade Endemics Trifolium calcaricum and Viola egglestonii, Rachel Ann Lyman

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Genetic Effects Mediated Through Epistatic Networks Onto Metabolic Traits, Juan Francisco Macias-Velasco

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Transcriptional and Epigenetic Regulation of Cerebellar Development and Function, Shahriyar Majidi

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Dissecting the neural circuits mediating pain-induced negative affect and drug-seeking behaviors, Tamara Markovic

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Deep Learning Deleterious Small Molecule Biochemistry from the Lab to the Clinic, Matthew Matlock

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Investigation of IFNγ-induced Control of Intracellular Pathogens, Michael Mcallaster

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Ascension and Adhesion of Uropathogenic Escherichia coli during Pyelonephritis, Lisa Kristine McLellan

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Modularity of Feedback for State-Dependent Guidance of Navigation in Mouse Visual Cortex, Andrew M. Meier

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Developments in Proteomics, Trans-Splicing Technology And Endogenous Transcript Manipulation, Justin Alexander Melendez

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The Role of Subclonal Gene Mutations During Progression from Myelodysplastic Syndrome to Secondary Acute Myeloid Leukemia, Andrew John Menssen

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A Novel Function of Plasmacytoid Dendritic Cells in Regulating Type 2 Immune Responses, Hannah Leigh Miller

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Prodrug Activation in Staphylococci and the Implications for Antimicrobial Development, Justin J. Miller

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Exploring β-cell Function and Heterogeneity in Obese SM/J Mice, Mario Alejandro Miranda

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Deconvolving Genomic Regulatory Heterogeneity with Self-Reporting Transposons, Arnav Moudgil

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The roles of plasmepsins IX and X in malaria parasite biology, Armiyaw Sebastian Nasamu

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The evolving mammalian 3D epigenome, Mayank Choudhary Nishikant Choudhary

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Metabolic Control and Immune Barriers of Hematopoietic Stem Cells, Hannah Pizzato

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Regulation of Host-Microbe Interactions in Autoimmunity and Antiviral Immunity by Cytosolic Nucleic Acid Sensing and Interferon Signaling, Derek Jerome Platt

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On the challenges and rewards of analyzing molecular dynamics at the terabyte and millisecond scale, Justin Roy Porter

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RNA Polymerase Binding Protein A (RbpA) Regulation of Mycobacteria Transcription and Sensitivity to Fidaxomicin, Jerome Prusa

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Genetic Variations in the Regulation and Biosynthesis of Polycyclic Tetramate Macrolactams, Yunci Qi

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The Role of Mature Secretory Cells in Gastrointestinal Regeneration, Megan Deanna Radyk

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Functional Optical Imaging of the Developing Mouse Cortex in Health and Disease, Rachel Marlene Rahn

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Comprehensive Characterization of the Genetic and Neoantigen Landscapes of Follicular Lymphoma Patients Supports the Feasibility of Personalized Cancer Vaccine Treatments, Cody Alexander Ramirez

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Targeting the PHGDH-mTOR Metabolic Axis in Osteosarcoma, Richa Rathore

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On Arousal and the Internal Regulation of Brain Function: Theory and Evidence across Modalities and Species, Ryan Raut

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Exploring the intrinsic and extrinsic factors that regulate breast cancer cell dormancy, Qihao Ren

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The Origins & Functional Effects of Postzygotic Mutations Throughout the Human Lifespan, Nicole Briana Rockweiler

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Discovery of Sex Differences in Response to p53 Loss and Gain-of-Function in Glioblastoma, Nathan Cuyle Rockwell

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Role of Secretory Leukocyte Protease Inhibitor in Urinary Tract Infection, Anne Rosen

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Influence of Focal Activity on Macroscale Brain Dynamics in Health and Disease, Zachary Pollack Rosenthal

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Investigating the Role of Bladder Epithelial Stem Cells in Bladder Mucosal Remodeling and Defense Against Infection, Seongmi Kim Russell

Regulation of Gut Commensal-Specific T Cell Differentiation by Dendritic Cell Subsets, Emilie Russler-Germain

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Measuring and Manipulating Tension-Dependent Behavior of Mechanosensitive Ion Channels, Angela M. Schlegel

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Structural Variants Are a Major Source of Gene Expression Differences in Humans and Often Affect Multiple Nearby Genes, Alexandra Jane Scott

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Precision Diffusion Imaging to Analyze Individual-Specific Plasticity, Nicole Andrea Seider

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Relating Spontaneous Activity and Cognitive States via NeuroDynamic Modeling, Matthew Singh

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Understanding and Exploiting Protein Allostery and Dynamics Using Molecular Simulations, Sukrit Singh

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Regulation of Metabolic Stress by the Snhg3 Locus, Arthur Curtis Sletten

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Characterizing a Novel Metabolic Pathogenic Mechanism in Familial Hemiplegic Migraine, Sarah Elizabeth Smith

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Glial inflammatory responses regulate neurocognitive recovery following viral encephalitis, Allison Luen Soung

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Role of Interferon Receptors in STING-Associated Autoinflammatory Disease in Mice, William Alexander Stinson

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Structural Analysis and Vaccine Efficacy of Hla mutants, Kelly Tomaszewski

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Uncovering a MYC-driven Tumor-suppressive Program in Proliferating Lymphocytes, Elena Tonc

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Investigating the differentiation and functional maturation of stem cell-derived β cells, Leonardo Velazco-Cruz

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Mechanisms of Natural Killer Cell Anti-Tumor Function and Homeostasis, Julia Alexandra Wagner

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Peripheral Nerve Macrophages and Their Implications in Neuroimmunity, Peter Leon Wang

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Regional Reprogramming and the Small Intestine: Analysis and Modeling of Adaptive Regeneration of the Epithelium, Sarah Elizabeth Waye

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Weedy rice as a model system for the study of microevolutionary interactions in agricultural contexts, Marshall Jon Wedger

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Genetic risk factors for neurodevelopmental disorders: insights from hiPSC-cerebral organoids, Michelle L. Wegscheid

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Of Mice and Toddlers: A Cross-Species Investigation of the Social Motivation Theory of Autism, Claire Weichselbaum

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Causal Function and Bias Correlation of the Orbitofrontal Cortex in Economic Choices, Shi Weikang

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Computational Analysis of Non-CpG DNA Methylation in the Mammalian Nervous System, Dennis Yawen Wu

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Apolipoprotein E Immunotherapy for the Preclinical Treatment of Alzheimer Disease and Cerebral Amyloid Angiopathy, Monica Xiong

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The Role of Neuronal ATP-sensitive Potassium Channels in Learning and Memory, Shaul Vladimir Yahil

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Identification of Multi-tissue Protein Quantitative Trait Loci and Causal Inference of Protein Effects in Neurological and Other Complex Human Diseases via Mendelian Randomization, Chengran Yang

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Chemical Damage to mRNA and Its Impact on Ribosome Quality-Control and Stress-Response Pathways in Eukaryotic Cells, Liewei Yan

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Contribution of TGF-b Signaling to the Pathogenesis of Myeloproliferative Neoplasms, Juo-Chin Yao

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Disentangling Glial Diversity in Peripheral Nerves at Single Nuclei Resolution, Aldrin Kay Yuen Yim

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The Role of eNAMPT-mediated Systemic NAD+ Biosynthesis in Aging and Lifespan, Mitsukuni Yoshida

Theses/Dissertations from 2020

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Genetic Interactions and Maternal Genes Modulate Congenital Heart Disease Risk, Ehiole Ogboma Akhirome

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Lymphatic Filariasis: Host and Parasite Factors and the Pathogenesis of Systemic Adverse Events Following Treatment, Britt Juul Andersen

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Elucidating Novel Mechanisms and Pathways of Pathogenesis, HDACi Resistance, and Disease Progression in B and T Cell Lymphomas through Integrated ‘omics Analyses, Jared Andrews

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Structural insights into host-pathogen interactions of alphaviruses, Katherine Basore

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Mechanisms of STING-Associated Vasculopathy and Immunodeficiency, Brock Gordon Bennion

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In Vivo Mechanisms of Natural Killer Cell Tolerance, Michael Bern

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Electrophysiology of the Inner Retina in Health and Disease: EAAT5 in the Rod Bipolar Cell and Oscillatory Potentials in Diabetes, Gregory William Bligard

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Transcription Factor-Mediated Epigenetic Regulation in the Healthy Brain and Neurological Disease, Alexander J. Cammack

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The Good, The Brown, and The Healthy: Understanding Non-Thermogenic Brown Adipose Function in Obese Mice, Caryn Nicole Carson

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Regulation of Yolk Microtubule Dynamics by Dachsous Cadherins, Gina Danielle Castelvecchi

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Mitochondrial Morphology, Oxidative Stress Resistance, and Pathogenesis in Cryptococcus neoformans, Andrew Lee Chang

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Characterizing the relationship between gut microbiota development and healthy growth, Hao-Wei Chang

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Nonsense Mediated RNA Decay Promotes Survival of Cells with Defective Splicing, Abigael Jeruto Cheruiyot

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The Role of ESCRT-III-like Subunit IST1 in Membrane Trafficking Pathways, Amy Kate Clippinger

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The role of CDX4 during patterning of definitive hemogenic mesoderm, John Philip Creamer

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Dendritic Cell Development and Function, Vivek Durai

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Structural Mechanism of Poxvirus Sabotage of T-cell Costimulation, Jabari Issa Elliott

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Advances in the Understanding of Auxin Signaling Through Indirect Mechanisms, Ryan Joseph Emenecker

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The Enzymatic Function of the TIR domain: From Axon Degeneration to Innate Immunity, Kow Essuman

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The Decision Maker: Understanding the role of IFRD1 in urothelial plasticity and regeneration, Bisiayo Erionmwon Fashemi

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Post-Lysosomal Cholesterol Trafficking: Novel Tools and Insights, Mckenna Rae Feltes

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Multi-omics Integration for Gene Fusion Discovery and Somatic Mutation Haplotyping in Cancer, Steven Mason Foltz

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Cognitive Recovery in the Post-Infectious CNS, Charise Joy Garber

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The Role of the Circadian Clock Protein Rev-erba in Neuroinflammation & Synaptic Health, Percy Griffin

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FGF18 in Postnatal Lung Development, Andrew Hagan

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A mechanistic and genomic analysis of molluscum contagiosum virus immune evasion, Ian Benjamin Harvey

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Joint Estimation of Perceptual, Cognitive, and Neural Processes, Katherine Heisey

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Developing Tools for Identifying Tissue-Specific Epigenetic Marks and Predicting DNA hydroxy/methylation, Yu He

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Effects of agonistic anti-CD137 antibody on chikungunya virus infection and B cell responses, Jun Hong

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Identification and Characterization of a Novel Non-homologous End Joining Factor MRI, Putzer Joseph Hung

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The Role of Apolipoprotein E in Alzheimer Disease: From Therapy to Mechanism, Tien-Phat Vuong Huynh