Publications, research, and other scholarship by faculty across all schools, departments, and centers at Washington University in St. Louis

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Research from 2012

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Studying Network Optimization in the Context of Self-Stabilization
Abusayeed Saifullah
Computer Science and Engineering

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Correction of an Augmentation Bound Analysis for Parallel Real-Time Tasks
Abusayeed Saifullah, Kunal Agrawal, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Real-Time Scheduling of Parallel Tasks under a General DAG Model
Abusayeed Saifullah, David Ferry, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Accounting for Failures in Delay Analysis for WirelessHART Networks
Abusayeed Saifullah, Paras Babu Tiwari, Bo Li, and Chenyang Lu lu@wustl.edu
Computer Science and Engineering

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Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum
Gerda Saxer, Paul Havlak, Sara A. Fox, Michael A. Quance, Sharu Gupta, Yuriy Fofanov, Joan E. Strassmann, and David C. Queller
Biology

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Amino Acid Repeats Cause Extraordinary Coding Sequence Variation in the Social Amoeba Dictyostelium discoideum
Clea Scala, Xiangjun Tian, Natasha J. Mehdiabadi, Margaret H. Smith, Gerda Saxer, Katie Stephens, Prince Buzombo, Joan E. Strassmann, and David C. Queller
Biology

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Nature and function of insulator protein binding sites in the Drosophila genome
Yuri Schwartz, Daniela Linder-Basso, Peter Kharchenko, Michael Tolstorukov, Maria Kim, Hua-Bing Li, Andrey Gorchakov, Aki Minoda, Gregory Shanower, Artyom Alekseyenko, Nicole Riddle, Youngsook Jung, Tingting Gu, Annette Plachetka, Sarah C.R. Elgin, Mitzi Kuroda, Peter Park, Mikhail Savitsky, Gary Karpen, and Vincenzo Pirrotta
Biology

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Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements
Monica Sentmanat and Sarah C.R. Elgin
Biology

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Why Wasp Foundresses Change Nests: Relatedness, Dominance, and Nest Quality
Perttu Seppä, David C. Queller, and Joan E. Strassmann
Biology

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Relations Between Twisted Derivations and Twisted Cyclic Homology
Jack M. Shapiro
Mathematics

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Services for Adults with an Autism Spectrum Disorder
Paul T. Shattuck, Anne M. Roux, Laura E. Hudson, Julie L. Taylor, Matthew J. Maenner, and Jean-Francois Trani
Social Work

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Foveon F13 Camera
David Shelley
Computer Science and Engineering

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'Delivering' Education; Maintaining Inequality. The case of children with disabilities in Afghanistan
Jean-Francois Trani, Parul Bakhshi, and Anand Nandipati
Social Work

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Measuring equity in disability and healthcare utilization in Afghanistan
Jean-Francois Trani and Cecile Barbou des Rosieres
Social Work

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Poverty and disability: A vicious circle? Evidence from Afghanistan and Zambia
Jean-Francois Trani and Mitchell M. Loeb
Social Work

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Single-molecule analysis of the microtubule cross-linking protein MAP65-1 reveals a molecular mechanism for contact-angle-dependent microtubule bundling
Amanda Tulin, Sheri McClerklin, Yue Huang, and Ram Dixit
Biology

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Specializing Interfaces for Citizen Science Segmentation of Volumetric Data
Michelle Vaughan, Cindy Grimm, Ruth Sowell, Robert Pless, and Stephen Kobourov
Computer Science and Engineering

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Plastids and pathogens: Mechanosensitive channels and survival in a hypoosmotic world
Kira M. Veley and Elizabeth S. Haswell
Biology

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Mechanosensitive channels protect plastids from hypoosmotic stress during normal plant growth
Kira M. Veley, Sarah Marshburn, Cara E. Clure, and Elizabeth S. Haswell
Biology

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A role for mechanosensitive channels in chloroplast and bacterial fission.
Margaret E. Wilson and Elizabeth S. Haswell
Biology

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Limitations and Solutions for Real-Time Local Inter-Domain Communication in Xen
Sisu Xi, Chong Li, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Early Warning System: Relay Sensor Deployment & Network Reliability Analysis
Zhicheng Yang
Computer Science and Engineering

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Functions of the Arabidopsis kinesin superfamily of microtubule-based motor proteins
Chuanmei Zhu and Ram Dixit
Biology

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Delaunay-restricted Optimal Triangulation of 3D Polygons
Ming Zou, Tao Ju, and Nathan Carr
Computer Science and Engineering

Research from 2011

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Hierarchical Scheduling for Multicores with Multilevel Cache Hierarchies
Kunal Agrawal and Jim Sukha
Computer Science and Engineering

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Eugenics and Modern Biology: Critiques of Eugenics, 1910-1945
Garland E. Allen
Biology

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Changing the culture of science education at research universities
W. Anderson, U Banerjee, C Drennan, Sarah C.R. Elgin, I Epstein, J Handelsman, G Hatfull, R Losick, D O'Dowd, B Olivera, S Strobel, G Walker, and I Warner
Biology

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Competencies: a cure for pre-med curriculum
Winston Anderson, Richard Amasino, Manuel Ares, Utpal Banerjee, Bonnie Bartel, Victor Corces, Catherine Drennan, Sarah C.R. Elgin, Irving Epstein, Ellen Fanning, Louis Guillette, Jo Handelsman, Graham Hatfull, Ronald Hoy, Darcy Kelley, Leslie Leinwand, Richard Losick, Yi Lu, David Lynn, Claudia Neuhauser, Diane O'Dowd, Toto Olivera, Pavel Pevzner, Rebecca Richards-Kortum, Jasper Rine, Robert Sah, Scott Strobel, Graham Walker, David Walt, Isiah Warner, Sue Wessler, Huntington Willard, and Richard Zare
Biology

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Introduction: Mass Incarceration and Masculinity through a Black Feminist Lense
Annette Ruth Appell and Adrienne D. Davis
Women, Gender and Sexuality Studies

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Generating Muscle Driven Arm Movements Using Reinforcement Learning
Alex S. Broad
Computer Science and Engineering

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Mercury BLASTN Biosequence Similarity Search System: Technical Reference Guide
Jeremy Buhler
Computer Science and Engineering

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Efficient Deadlock Avoidance for Streaming Computation with Filtering
Jeremy Buhler, Kunal Agrawal, Peng Li, and Roger D. Chamberlain
Computer Science and Engineering

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Bad Girls of Art and Law: Abjection, Power, and Sexuality Exceptionalism in (Kara Walker’s) Art and (Janet Halley’s) Law
Adrienne D. Davis
Women, Gender and Sexuality Studies

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Erotic Entitlements Part I: A Reply to Sex Therapy in the Age of Viagra: "Money Can’t Buy Me Love"
Adrienne D. Davis
Women, Gender and Sexuality Studies

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An assessment of histone-modification antibody quality
Thea Egelhofer, Aki Minoda, Sarit Klugman, Kyungjoon Lee, Paulina Kolasinska-Zwierz, Artyom Alekseyenko, Ming-Sin Cheung, Daniel Day, Sarah Gadel, Andrey Gorchakov, Tingting Gu, Peter Kharchenko, Samantha Kuan, Isabel Latorre, Daniela Linder-Basso, Ying Luu, Queminh Ngo, Marc Perry, Andreas Rechtsteiner, Nicole Riddle, Yuri Schwartz, Gregory Shanower, Anne Vielle, Julie Ahringer, Sarah C.R. Elgin, Mitzi Kuroda, Vincenzo Pirrotta, Bing Ren, Susan Strome, Peter Park, Gary Karpen, R Hawkins, and Jason Lieb
Biology

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Flux Balance Analysis of Dynamic Metabolism in Shewanella oneidensis MR-1 Using a Static Optimization Approach
Xueyang Feng, You Xu, Yixin Chen, and Yinjie Tang
Computer Science and Engineering

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Feedback Thermal Control of Real-time Systems on Multicore Processors
Yong Fu, Nicholas Kottenstette, Chenyang Lu, and Xenofon D. Koutsoukos
Computer Science and Engineering

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Results of an observational study on sketching
Cindy Grimm
Computer Science and Engineering

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Disability and poverty: the need for a more nuanced understanding of implications for development policy and practice
Nora Groce, Maria Kett, Raymond Lang, and Jean-Francois Trani
Social Work

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Expression and Characterization of the Bacterial Mechanosensitive Channel MscS in Xenopus laevis Oocytes.
Elizabeth S. Haswell and Grigory Maksaev
Biology

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Mechanosensitive channels: what can they do and how do they do it?
Elizabeth S. Haswell, Rob Phillips, and Douglas C. Rees
Biology

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Effect of environmental conditions on perceived psychological restorativeness of coastal parks
J. Aaron Hipp and Oladele A. Ogunseitan
Social Work

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Implementation and Evaluation of Mixed-Criticality Scheduling Approaches for Periodic Tasks
Huang-Ming Huang, Christopher Gill, and Chenyang Lu
Computer Science and Engineering

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Myosin VI Regulates Actin Structure Specialization through Conserved Cargo-Binding Domain Sites
Mamiko Isaji, Marta Lenartowska, Tatsuhiko Noguchi, Deborah J. Frank, and Kathryn G. Miller
Biology

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
Peter Kharchenko, Artyom Alekseyenko, Yuri Schwartz, Aki Minoda, Nicole Riddle, Jason Ernst, Peter Sabo, Erica Larschan, Andrey Gorchakov, Tingting Gu, Daniela Linder-Basso, Annette Plachetka, Gregory Shanower, Michael Tolstorukov, Lovelace Luquette, Ruibin Xi, Youngsook Jung, Richard Park, Eric Bishop, Theresa Canfield, Richard Sandstrom, Robert Thurman, David MacAlpine, John Stamatoyannopoulos, Manolis Kellis, Sarah C.R. Elgin, Mitzi Kuroda, Vincenzo Pirrotta, Gary Karpen, and Peter Park
Biology

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Webcam Image Alignment
Matthew Klein
Computer Science and Engineering

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Will the use of Less Fecund Cultivars Reduce the Invasiveness of Perennial Plants?
Tiffany M. Knight, Kayri Havens, and Pati Vitt
Biology

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Real Time Baseball Augmented Reality
Adam Kraft
Computer Science and Engineering

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A Survey on Communication Networks in Emergency Warning Systems
Yan Li
Computer Science and Engineering

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Optimization of Gene Prediction via More Accurate Phylogenetic Substitution Models
Ezekiel Maier, Randall H. Brown, and Michael R. Brent
Computer Science and Engineering