Publications, research, and other scholarship by faculty across all schools, departments, and centers at Washington University in St. Louis

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Publications from 2012

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Poverty and disability: A vicious circle? Evidence from Afghanistan and Zambia
Jean-Francois Trani and Mitchell M. Loeb
Social Work

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Single-molecule analysis of the microtubule cross-linking protein MAP65-1 reveals a molecular mechanism for contact-angle-dependent microtubule bundling
Amanda Tulin, Sheri McClerklin, Yue Huang, and Ram Dixit
Biology

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Specializing Interfaces for Citizen Science Segmentation of Volumetric Data
Michelle Vaughan, Cindy Grimm, Ruth Sowell, Robert Pless, and Stephen Kobourov
Computer Science and Engineering

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Plastids and pathogens: Mechanosensitive channels and survival in a hypoosmotic world
Kira M. Veley and Elizabeth S. Haswell
Biology

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Mechanosensitive channels protect plastids from hypoosmotic stress during normal plant growth
Kira M. Veley, Sarah Marshburn, Cara E. Clure, and Elizabeth S. Haswell
Biology

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A role for mechanosensitive channels in chloroplast and bacterial fission.
Margaret E. Wilson and Elizabeth S. Haswell
Biology

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Limitations and Solutions for Real-Time Local Inter-Domain Communication in Xen
Sisu Xi, Chong Li, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Early Warning System: Relay Sensor Deployment & Network Reliability Analysis
Zhicheng Yang
Computer Science and Engineering

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Functions of the Arabidopsis kinesin superfamily of microtubule-based motor proteins
Chuanmei Zhu and Ram Dixit
Biology

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Delaunay-restricted Optimal Triangulation of 3D Polygons
Ming Zou, Tao Ju, and Nathan Carr
Computer Science and Engineering

Research from 2011

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Hierarchical Scheduling for Multicores with Multilevel Cache Hierarchies
Kunal Agrawal and Jim Sukha
Computer Science and Engineering

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Eugenics and Modern Biology: Critiques of Eugenics, 1910-1945
Garland E. Allen
Biology

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Changing the culture of science education at research universities
W. Anderson, U Banerjee, C Drennan, Sarah C.R. Elgin, I Epstein, J Handelsman, G Hatfull, R Losick, D O'Dowd, B Olivera, S Strobel, G Walker, and I Warner
Biology

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Competencies: a cure for pre-med curriculum
Winston Anderson, Richard Amasino, Manuel Ares, Utpal Banerjee, Bonnie Bartel, Victor Corces, Catherine Drennan, Sarah C.R. Elgin, Irving Epstein, Ellen Fanning, Louis Guillette, Jo Handelsman, Graham Hatfull, Ronald Hoy, Darcy Kelley, Leslie Leinwand, Richard Losick, Yi Lu, David Lynn, Claudia Neuhauser, Diane O'Dowd, Toto Olivera, Pavel Pevzner, Rebecca Richards-Kortum, Jasper Rine, Robert Sah, Scott Strobel, Graham Walker, David Walt, Isiah Warner, Sue Wessler, Huntington Willard, and Richard Zare
Biology

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Introduction: Mass Incarceration and Masculinity through a Black Feminist Lense
Annette Ruth Appell and Adrienne D. Davis
Women, Gender and Sexuality Studies

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Generating Muscle Driven Arm Movements Using Reinforcement Learning
Alex S. Broad
Computer Science and Engineering

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Mercury BLASTN Biosequence Similarity Search System: Technical Reference Guide
Jeremy Buhler
Computer Science and Engineering

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Efficient Deadlock Avoidance for Streaming Computation with Filtering
Jeremy Buhler, Kunal Agrawal, Peng Li, and Roger D. Chamberlain
Computer Science and Engineering

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Bad Girls of Art and Law: Abjection, Power, and Sexuality Exceptionalism in (Kara Walker’s) Art and (Janet Halley’s) Law
Adrienne D. Davis
Women, Gender and Sexuality Studies

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Erotic Entitlements Part I: A Reply to Sex Therapy in the Age of Viagra: "Money Can’t Buy Me Love"
Adrienne D. Davis
Women, Gender and Sexuality Studies

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An assessment of histone-modification antibody quality
Thea Egelhofer, Aki Minoda, Sarit Klugman, Kyungjoon Lee, Paulina Kolasinska-Zwierz, Artyom Alekseyenko, Ming-Sin Cheung, Daniel Day, Sarah Gadel, Andrey Gorchakov, Tingting Gu, Peter Kharchenko, Samantha Kuan, Isabel Latorre, Daniela Linder-Basso, Ying Luu, Queminh Ngo, Marc Perry, Andreas Rechtsteiner, Nicole Riddle, Yuri Schwartz, Gregory Shanower, Anne Vielle, Julie Ahringer, Sarah C.R. Elgin, Mitzi Kuroda, Vincenzo Pirrotta, Bing Ren, Susan Strome, Peter Park, Gary Karpen, R Hawkins, and Jason Lieb
Biology

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Flux Balance Analysis of Dynamic Metabolism in Shewanella oneidensis MR-1 Using a Static Optimization Approach
Xueyang Feng, You Xu, Yixin Chen, and Yinjie Tang
Computer Science and Engineering

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Feedback Thermal Control of Real-time Systems on Multicore Processors
Yong Fu, Nicholas Kottenstette, Chenyang Lu, and Xenofon D. Koutsoukos
Computer Science and Engineering

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Results of an observational study on sketching
Cindy Grimm
Computer Science and Engineering

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Disability and poverty: the need for a more nuanced understanding of implications for development policy and practice
Nora Groce, Maria Kett, Raymond Lang, and Jean-Francois Trani
Social Work

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Expression and Characterization of the Bacterial Mechanosensitive Channel MscS in Xenopus laevis Oocytes.
Elizabeth S. Haswell and Grigory Maksaev
Biology

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Mechanosensitive channels: what can they do and how do they do it?
Elizabeth S. Haswell, Rob Phillips, and Douglas C. Rees
Biology

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Effect of environmental conditions on perceived psychological restorativeness of coastal parks
J. Aaron Hipp and Oladele A. Ogunseitan
Social Work

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Implementation and Evaluation of Mixed-Criticality Scheduling Approaches for Periodic Tasks
Huang-Ming Huang, Christopher Gill, and Chenyang Lu
Computer Science and Engineering

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Myosin VI Regulates Actin Structure Specialization through Conserved Cargo-Binding Domain Sites
Mamiko Isaji, Marta Lenartowska, Tatsuhiko Noguchi, Deborah J. Frank, and Kathryn G. Miller
Biology

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
Peter Kharchenko, Artyom Alekseyenko, Yuri Schwartz, Aki Minoda, Nicole Riddle, Jason Ernst, Peter Sabo, Erica Larschan, Andrey Gorchakov, Tingting Gu, Daniela Linder-Basso, Annette Plachetka, Gregory Shanower, Michael Tolstorukov, Lovelace Luquette, Ruibin Xi, Youngsook Jung, Richard Park, Eric Bishop, Theresa Canfield, Richard Sandstrom, Robert Thurman, David MacAlpine, John Stamatoyannopoulos, Manolis Kellis, Sarah C.R. Elgin, Mitzi Kuroda, Vincenzo Pirrotta, Gary Karpen, and Peter Park
Biology

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Webcam Image Alignment
Matthew Klein
Computer Science and Engineering

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Will the use of Less Fecund Cultivars Reduce the Invasiveness of Perennial Plants?
Tiffany M. Knight, Kayri Havens, and Pati Vitt
Biology

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Real Time Baseball Augmented Reality
Adam Kraft
Computer Science and Engineering

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A Survey on Communication Networks in Emergency Warning Systems
Yan Li
Computer Science and Engineering

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Optimization of Gene Prediction via More Accurate Phylogenetic Substitution Models
Ezekiel Maier, Randall H. Brown, and Michael R. Brent
Computer Science and Engineering

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Society for the Advancement of Biology Education Research (SABER)
Erika G. Offerdahl, Teri Balser, Clarissa Dirks, Kathryn Miller, Jennifer L. Momsen, Lisa Montplaisir, Marcy Osgood, Karen Sirum, Mary Pat Wenderoth, Brian White, William B. Wood, Michelle Withers, and Robin Wright
Biology

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On the utility of population models for invasive plant management: response to Evans and Davis
Eleanor A. Pardini, John M. Drake, and Tiffany M. Knight
Biology

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European Kinship: Eastern European Women Go to Market
Anca Parvulescu
Women, Gender and Sexuality Studies

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Measuring a Community-based Mental Health Organization’s Culture and Climate Scores Stability
David A. Patterson Silver Wolf (Adelv unegv Waya) PhD, Eugene Maguin PhD, Catherine N. Dulmus PhD, and Bruce C. Nisbet
Social Work

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Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4
Welkin Pope, Christina Ferreira, Deborah Jacobs-Sera, Robert Benjamin, Ariangela Davis, Randall Dejong, Sarah C.R. Elgin, Forrest Guilfoile, Mark Forsyth, Alexander Harris, Samuel Harvey, Lee Hughes, Peter Hynes, Arrykka Jackson, Marilyn Jalal, Elizabeth MacMurray, Coreen Manley, Molly McDonough, Jordan Mosier, Larissa Osterbann, Hannah Rabinowitz, Corwin Rhyan, Daniel Russell, Margaret Saha, Christopher Shaffer, Stephanie Simon, Erika Sims, Isabel Tovar, Emilie Weisser, John Wertz, Kathleen Weston-Hafer, Kurt Williamson, Bo Zhang, Steven Cresawn, Paras Jain, Mariana Piuri, William Jacobs, Roger Hendrix, and Graham Hatfull
Biology

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Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.
Welkin Pope, Deborah Jacobs-Sera, Daniel Russell, Craig Peebles, Zein Al-Atrache, Turi Alcoser, Lisa Alexander, Matthew Alfano, Samantha Alford, Nichols Amy, Marie Anderson, Alexander Anderson, Andrew Ang, Manuel Ares Jr, Amanda Barber, Lucia Barker, Jonathan Barrett, William Barshop, Cynthia Bauerle, Ian Bayles, Katherine Belfield, Aaron Best, Agustin Borjon Jr, Charles Bowman, Christine Boyer, Kevin Bradley, Victoria Bradley, Lauren Broadway, Keshav Budwal, Kayla Busby, Ian Campbell, Anne Campbell, Alyssa Carey, Steven Caruso, Rebekah Chew, Chelsea Cockburn, Lianne Cohen, Jeffrey Corajod, Steven Cresawn, Kimberly Davis, Lisa Deng, Dee Denver, Breyon Dixon, Sahrish Ekram, Sarah C.R. Elgin, Angela Engelsen, Belle English, Marcella Erb, Crystal Estrada, Laura Filliger, Ann Findley, Lauren Forbes, Mark Forsyth, Tyler Fox, Melissa Fritz, Roberto Garcia, Zindzi George, Anne Georges, Christopher Gissendanner, Shannon Goff, Rebecca Goldstein, Kobie Gordon, Russell Green, Stephanie Guerra, Krysta Guiney-Olsen, Bridget Guiza, Leila Haghighat, Garrett Hagopian, Catherine Harmon, Jeremy Harmson, Grant Hartzog, Samuel Harvey, Siping He, Kevin He, Kaitlin Healy, Ellen Higinbotham, Erin Hildebrandt, Jason Ho, Gina Hogan, Victoria Hohenstein, Nathan Holz, Vincent Huang, Ericka Hufford, Peter Hynes, Arrykka Jackson, Erica Jansen, Jonathan Jarvik, Paul Jasinto, Tuajuanda Jordan, Tomas Kasza, Murray Katelyn, Jessica Kelsey, Larisa Kerrigan, Daryl Khaw, Junghee Kim, Justin Knutter, Ching-Chung Ko, Gail Larkin, Jennifer Laroche, Asma Latif, Kohana Leuba, Sequoia Leuba, Lynn Lewis, Kathryn Loesser-Case, Courtney Long, A Javier Lopez, Nicholas Lowery, Tina Lu, Victor Mac, Isaac Masters, Jazmyn McCloud, Molly McDonough, Andrew Medenbach, Anjali Menon, Rachel Miller, Brandon Morgan, Patrick Ng, Elvis Nguyen, Katrina Nguyen, Emilie Nguyen, Kaylee Nicholson, Lindsay Parnell, Caitlin Peirce, Allison Perz, Luke Peterson, Rachel Pferdehirt, Seegren Philip, Kit Pogliano, Joe Pogliano, Tamsen Polley, Erica Puopolo, Lauren Rodriguez, Hannah Rabinowitz, Michael Resiss, Corwin Rhyan, Yetta Robinson, Andrew Rose, Jeffrey Rubin, Jessica Ruby, Margaret Saha, James Sandoz, Judith Savitskaya, Dale Schipper, Christine Schnitzler, Amanda Schott, J Bradley Segal, Christopher Shaffer, Kathryn Sheldon, Erica Shepard, Jonathan Shepardson, Madav Shroff, Jessica Simmons, Erika Simms, Brandy Simpson, Kathryn Sinclair, Robert Sjoholm, Ingrid Slette, Blaire Spaulding, Clark Straub, Joseph Stukey, Trevor Sughrue, Tin-Yun Tang, Lyons Tatyana, Stephen Taylor, Barbara Taylor, Louise Temple, Jasper Thompson, Michael Tokarz, Stephanie Trapani, Alexander Troum, Jonathan Tsay, Anthony Thomas Tubbs, Jillian Walton, Danielle Wang, Hannah Wang, John Warner, Emilie Weisser, Samantha Wendler, Kathleen Weston-Hafer, Hilary Whelan, Kurt Williamson, Angelica Willis, Hannah Wirtshafter, Theresa Wong, Phillip Wu, Yun jeong Yang, Brandon Yee, David Zaidins, Bo Zhang, Melina Zúniga, Roger Hendrix, and Graham Hatfull
Biology

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A synthesis of plant invasion effects on biodiversity across spatial scales
Kristin I. Powell, Jonathan M. Chase, and Tiffany M. Knight
Biology

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Event Perception
Gabriel A. Radvansky and Jeffrey M. Zacks
Psychology

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Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
Nicole Riddle, Aki Minoda, Peter Kharchenko, Artyom Alekseyenko, Yuri Schwartz, Michael Tolstorukov, Andrey Gorchakov, Jacob Jaffe, Cameron Kennedy, Daniela Linder-Basso, Sally Peach, Gregory Shanower, Haiyan Zheng, Mitzi Kuroda, Vincenzo Pirrotta, Peter Park, Sarah C.R. Elgin, and Gary Karpen
Biology

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2-Edge-Connectivity and 2-Vertex-Connectivity with Fault Containment
Abusayeed Saifullah
Computer Science and Engineering

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Multi-core Real-Time Scheduling for Generalized Parallel Task Models
Abusayeed Saifullah, Kunal Agrawal, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Near Optimal Rate Selection for Wireless Control Systems
Abusayeed Saifullah, Chengjie Wu, Paras Babu Tiwari, You Xu, Yong Fu, Chenyang Lu, and Yixin Chen
Computer Science and Engineering

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Distributed Channel Allocation Algorithms for Wireless Sensor Networks
Abusayeed Saifullah, You Xu, Chenyang Lu, and Yixin Chen
Computer Science and Engineering

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End-to-End Communication Delay Analysis in WirelessHART Networks
Abusayeed Saifullah, You Xu, Chenyang Lu, and Yixin Chen
Computer Science and Engineering