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Research from 2024

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Optimization of a Quantum Subset Sum Oracle
Angelo G. Benoit, Sam Schwartz, and Ron K. Cytron

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Single-Molecule Orientation Imaging Reveals the Nano-Architecture of Amyloid Fibrils Undergoing Growth and Decay, Brian Sun, Tianben Ding, Weiyan Zhou, Tara S. Porter, and Matthew D. Lew

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6D single-fluorogen orientation-localization microscopy for elucidating the architecture of beta-sheet assemblies and biomolecular condensates, Tingting Wu, Weiyan Zhou, Jai S. Rudra, Rohit V. Pappu, and Matthew D. Lew

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Resolving the Nanoscale Structure of β-Sheet Peptide Self-Assemblies Using Single-Molecule Orientation–Localization Microscopy, Weiyan Zhou, Conor L. O'Neill, Tianben Ding, Oumeng Zhang, Jai S. Rudra, and Matthew D. Lew

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Fundamental Limits in Measuring the Anisotropic Rotational Diffusion of Single Molecules, Weiyan Zhou, Tingting Wu, and Matthew D. Lew

Submissions from 2022

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Six-dimensional single-molecule imaging with isotropic resolution using a multi-view reflector microscope, Oumeng Zhang, Zijian Guo, Yuanyuan He, Tingting Wu, Michael D. Vahey, and Matthew D. Lew

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Resolving the Three-Dimensional Rotational and Translational Dynamics of Single Molecules Using Radially and Azimuthally Polarized Fluorescence, Oumeng Zhang, Weiyan Zhou, Jin Lu, Tingting Wu, and Matthew D. Lew

Submissions from 2021

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Single-Molecule Localization Microscopy of 3D Orientation and Anisotropic Wobble Using a Polarized Vortex Point Spread Function, Tianben Ding and Matthew D. Lew

Data from Virtualized Hardware Logic Computations
Michael J. Hall, Roger Chamberlain, and Neil E. Olsen

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Computational Modelling Enables Robust Multidimensional Nanoscopy, Matthew D. Lew

Adversarial Attack and Defense on Image Classification under Physical Constraints
Tong Wu
Computer Science and Engineering

Research from 2020

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Elicitation and aggregation of data in knowledge intensive crowdsourcing
Dohoon Kim
Computer Science and Engineering

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A Virtual 4D CT Scanner
Xiwen Li
Computer Science and Engineering

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Centrality of Blockchain
Zixuan Li
Computer Science and Engineering

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Single‐Molecule 3D Orientation Imaging Reveals Nanoscale Compositional Heterogeneity in Lipid Membranes, Jin Lu, Hesam Mazidi, Tianben Ding, Oumeng Zhang, and Matthew D. Lew

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Measuring localization confidence for quantifying accuracy and heterogeneity in single-molecule super-resolution microscopy, Hesam Mazidi, Tianben Ding, Arye Nehorai, and Matthew D. Lew

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The Effects of Mixed-Initiative Visualization Systems on Exploratory Data Analysis
Alvitta Ottley and Adam Kern

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Nanoscale Colocalization of Fluorogenic Probes Reveals the Role of Oxygen Vacancies in the Photocatalytic Activity of Tungsten Oxide Nanowires, Meikun Shen, Tianben Ding, Steven T. Hartman, Fudong Wang, Christina Krucylak, Zheyu Wang, Che Tan, Bo Yin, Rohan Mishra, Matthew D. Lew, and Bryce Sadtler

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A computationally-efficient bound for the variance of measuring the orientation of single molecules, Tingting Wu, Tianben Ding, Hesam Mazidi, Oumeng Zhang, and Matthew D. Lew

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Solving disappearance at GASTech with visual analytic techniques
Saulet Yskak
Computer Science and Engineering

Research from 2019

A System for TA Checkouts
Benjamin Choi
Computer Science and Engineering

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Static Taint Analysis of Binary Executables Using Architecture-Neutral Intermediate Representation
Elaine Cole
Computer Science and Engineering

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Long-term, super-resolution imaging of amyloid structures using transient amyloid binding microscopy, Tianben Ding, Kevin Spehar, Jan Bieschke, and Matthew D. Lew

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A Survey on the Role of Individual Differences on Visual Analytics Interactions: Masters Project Report
Jesse Huang and Alvitta Ottley
Computer Science and Engineering

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Pipelined Parallelism in a Work-Stealing Scheduler
Thomas Kelly
Computer Science and Engineering

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Feature Extraction form CT Scan of Plant Root
Chunyuan Li

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Point Cloud Processing with Neural Networks
Stephanie Miller and Jiahao Li
Computer Science and Engineering

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Challenges in Integrating IoT in Smart Home
Leiquan Pan and Chenyang Lu
Computer Science and Engineering

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Smart Home Audio Assistant
Xipeng Wang
Computer Science and Engineering

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Fundamental limits of measuring single-molecule rotational mobility, Oumeng Zhang and Matthew D. Lew

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Erratum: "Imaging the three‐dimensional orientation and rotational mobility of fluorescent emitters using the Tri‐spot point spread function", Oumeng Zhang, Jin Lu, Tianben Ding, and Matthew D. Lew

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Computational Geometry Teaching Tool
Yujie Zhou and Tao Ju

Submissions from 2018

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A robust statistical estimation (RoSE) algorithm jointly recovers the 3D location and intensity of single molecules accurately and precisely, Hesam Mazidi, Arye Nehorai, and Matthew D. Lew

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Super‐Resolution Imaging of Amyloid Structures over Extended Times by Using Transient Binding of Single Thioflavin T Molecules, Kevin Spehar, Tianben Ding, Yuanzi Sun, Niraja Kedia, Jin Lu, George R. Nahass, Matthew D. Lew, and Jan Bieschke

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Measuring 3D molecular orientation and rotational mobility using a Tri-spot point spread function, Oumeng Zhang, Tianben Ding, Jin Lu, Hesam Mazidi, and Matthew D. Lew

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Imaging the Three-Dimensional Orientation and Rotational Mobility of Fluorescent Emitters using the Tri-Spot Point Spread Function, Oumeng Zhang, Jin Lu, Tianben Ding, and Matthew D. Lew

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Security Services Using Blockchains: A State of the Art Survey
Maeda Zolanvari, Aiman Erbad, Raj Jain, and Mohammed Samaka

Research from 2017

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Decoupling Information and Connectivity in Information-Centric Networking
Hila Ben Abraham, Jyoti Parwatikar, John Dehart, Adam Drescher, and Patrick Crowley

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Pricing and Bidding Strategies for Cloud Computing Spot Instances
Jiayi Song and Roch A. Guérin

Research from 2016

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In-Network Retransmissions in Named Data Networking
Hila Ben Abraham and Patrick Crowley

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MERCATOR (Mapping EnumeRATOR for CUDA) User's Manual
Stephen V. Cole and Jeremy Buhler

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Multipath and Rate Stability
Junjie Liu and Roch A. Guérin

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Locality-Aware Dynamic Task Graph Scheduling
Jordyn Maglalang, Sriram Krishnamoorthy, and Kunal Agrawal

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Grafalgo - A Library of Graph Algorithms and Supporting Data Structures (revised)
Jonathan Turner

Research from 2015

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WOODSTOCC: Extracting Latent Parallelism from a DNA Sequence Aligner on a GPU
Stephen V. Cole, Jacob R. Gardner, and Jeremy D. Buhler
Computer Science and Engineering

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Faster Maximium Priority Matchings in Bipartite Graphs
Jonathan Turner

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Grafalgo - A Library of Graph Algorithms and Supporting Data Structures
Jonathan Turner
Computer Science and Engineering

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Maximum Priority Matchings
Jonathan Turner

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The Bounded Edge Coloring Problem and Offline Crossbar Scheduling
Jonathan Turner

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The Edge Group Coloring Problem with Applications to Multicast Switching
Jonathan Turner
Computer Science and Engineering

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Maximizing Network Lifetime of Wireless Sensor-Actuator Networks under Graph Routing
Chengjie Wu, Dolvara Gunatilaka, Abusayeed Saifullah, Mo Sha, Paras Tiwari, Chenyang Lu, and Yixin Chen
Computer Science and Engineering

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Conflict-Aware Real-Time Routing for Industrial Wireless Sensor-Actuator Networks
Chengjie Wu, Dolvara Gunatilaka, Mo Sha, and Chenyang Lu
Computer Science and Engineering

Research from 2014

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Exploring User-Provided Connectivity
Mohammad H. Afrasiabi and Roch Guerin
Computer Science and Engineering

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Data Transport System
Rahav Dor
Computer Science and Engineering

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CloudPowerCap: Integrating Power Budget and Resource Management across a Virtualized Server Cluster
Yong Fu, Anne Holler, and Chenyang Lu
Computer Science and Engineering

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Performance Modeling of Virtualized Custom Logic Computations
Michael J. Hall and Roger D. Chamberlain
Computer Science and Engineering

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Federated Scheduling for Stochastic Parallel Real-time Tasks
Jing Li, Kunal Agrawal, Christopher Gill, and Chenyang Lu
Computer Science and Engineering

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Capacity Augmentation Bound of Federated Scheduling for Parallel DAG Tasks
Jing Li, Abusayeed Saifullah, Kunal Agrawal, and Christopher Gill
Computer Science and Engineering

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Migrating to IPv6 - The Role of Basic Coordination
Mehdi Nikkhah and Roch Guerin
Computer Science and Engineering

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Inferring Memory Map Instructions
Paul T. Scheid, Ari J. Spilo, and Ron K. Cytron
Computer Science and Engineering

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RT-OpenStack: a Real-Time Cloud Management System
Sisu Xi, Chong Li, Chenyang Lu, Christopher D. Gill, Meng Xu, Linh T.X. Phan, Insup Lee, and Oleg Sokolsky
Computer Science and Engineering

Research from 2013

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Simple Analytic Performance Models for Streaming Data Applications Deployed on Diverse Architectures
Jonathan C. Beard, Roger D. Chamberlain, and Mark A. Franklin
Computer Science and Engineering

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Kernel Density Metric Learning
Yujie He, Wenlin Chen, and Yixin Chen
Computer Science and Engineering

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Adding Data Parallelism to Streaming Pipelines for Throughput Optimization
Peng Li, Kunal Agrawal, Jeremy Buhler, and Roger D. Chamberlain
Computer Science and Engineering

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Efficient Parallel Real-Time Upsampling of Ultrasound Vectors
William D. Richard Ph.D.
Computer Science and Engineering

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Parallel Real-Time Scheduling of DAGs
Abusayeed Saifullah, David Ferry, Jing Li, Kunal Agrawal, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Self-Adapting MAC Layer for Wireless Sensor Networks
Mo Sha, Meng Xu, Chenyang Lu, Linh T.X. Phan, Tae-Suk Kim, and Taerim Park
Computer Science and Engineering

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Automated Color Calibration of Display Devices
Andrew Shulman
Computer Science and Engineering

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EWA Model with Recency Effect and Limited Memory
Hang Xie
Computer Science and Engineering

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Real-Time Multi-Core Virtual Machine Scheduling in Xen
Sisu Xi, Meng Xu, Chenyang Lu, Linh T.X. Phan, Christopher Gill, Olga Sokolsky, and Insup Lee
Computer Science and Engineering

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Scanner: An Efficient and Accurate Trimming Tool for Illumina Next Generation Sequencing Reads
Xiang Zhou
Computer Science and Engineering

Research from 2012

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Common DMA Engine Interface
Roger Alessi
Computer Science and Engineering

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Kinect Hand Recognition and Tracking
Alex Drake
Computer Science and Engineering

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Rapid Development Environments for Therapy Games: Looking Glass Therapy Games for Cerebral Palsy Treatment Utilizing the Kinect
Melynda Eden
Computer Science and Engineering

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Implementation of Real-Time Calibration of Polarization Imaging Sensors
Collin Foster
Computer Science and Engineering

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Just Draw It! A 3D Sketching System
Cindy Grimm and Pushkar Joshi
Computer Science and Engineering

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Building a Skeleton of a Human Hand Using Microsoft Kinect
Jed Jackoway
Computer Science and Engineering

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RIDE: A Mixed-Mode Control Interface for Mobile Robot Teams
Erik Karulf, Marshall Strother, Parker Dunton, and William D. Smart
Computer Science and Engineering

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The Clear Channel Prior
Devorah Langsam
Computer Science and Engineering

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Data collection and performance monitoring of real-time parallel systems
Mahesh Mahadevan
Computer Science and Engineering

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A Memory Access Model for Highly-threaded Many-core Architectures
Lin Ma, Kunal Agrawal, and Roger D. Chamberlain
Computer Science and Engineering

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An Integrated Data Mining Approach to Real-time Clinical Monitoring and Deterioration Warning
Yi Mao, Wenlin Chen, Yixin Chen, and Chenyang Lu
Computer Science and Engineering

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A 3D Selection & Query Tool for the GeneAtlas Project
Donald McCurdy
Computer Science and Engineering

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Youpon
Garrison Prinslow
Computer Science and Engineering

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Self-Stabilization in the Distributed Systems of Finite State Machines
Abusayeed Saifullah
Computer Science and Engineering

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Studying Network Optimization in the Context of Self-Stabilization
Abusayeed Saifullah
Computer Science and Engineering

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Correction of an Augmentation Bound Analysis for Parallel Real-Time Tasks
Abusayeed Saifullah, Kunal Agrawal, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Real-Time Scheduling of Parallel Tasks under a General DAG Model
Abusayeed Saifullah, David Ferry, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Accounting for Failures in Delay Analysis for WirelessHART Networks
Abusayeed Saifullah, Paras Babu Tiwari, Bo Li, and Chenyang Lu lu@wustl.edu
Computer Science and Engineering

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Foveon F13 Camera
David Shelley
Computer Science and Engineering

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Specializing Interfaces for Citizen Science Segmentation of Volumetric Data
Michelle Vaughan, Cindy Grimm, Ruth Sowell, Robert Pless, and Stephen Kobourov
Computer Science and Engineering

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Limitations and Solutions for Real-Time Local Inter-Domain Communication in Xen
Sisu Xi, Chong Li, Chenyang Lu, and Christopher Gill
Computer Science and Engineering

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Early Warning System: Relay Sensor Deployment & Network Reliability Analysis
Zhicheng Yang
Computer Science and Engineering

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Delaunay-restricted Optimal Triangulation of 3D Polygons
Ming Zou, Tao Ju, and Nathan Carr
Computer Science and Engineering

Research from 2011

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Hierarchical Scheduling for Multicores with Multilevel Cache Hierarchies
Kunal Agrawal and Jim Sukha
Computer Science and Engineering

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Generating Muscle Driven Arm Movements Using Reinforcement Learning
Alex S. Broad
Computer Science and Engineering

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Mercury BLASTN Biosequence Similarity Search System: Technical Reference Guide
Jeremy Buhler
Computer Science and Engineering

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Efficient Deadlock Avoidance for Streaming Computation with Filtering
Jeremy Buhler, Kunal Agrawal, Peng Li, and Roger D. Chamberlain
Computer Science and Engineering

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Flux Balance Analysis of Dynamic Metabolism in Shewanella oneidensis MR-1 Using a Static Optimization Approach
Xueyang Feng, You Xu, Yixin Chen, and Yinjie Tang
Computer Science and Engineering

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Feedback Thermal Control of Real-time Systems on Multicore Processors
Yong Fu, Nicholas Kottenstette, Chenyang Lu, and Xenofon D. Koutsoukos
Computer Science and Engineering