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Research from 2007

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Unwoven Aspect Analysis
Morgan G. Deters

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Context-Aware Publish Subscribe in Mobile ad Hoc Networks
Davide Frey and Gruia-Catalin Roman
Computer Science and Engineering

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Comparing Features of Three-Dimensional Object Models Using Registration Based on Surface Curvature Signatures
Timothy David Gatzke and Cindy M. Grimm

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Improving Individual Flow Performance with Multiple Queue Fair Queuing
Manfred Georg, Christopher Jechlitschek, and Sergey Gorinsky
Computer Science and Engineering

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Efficient Fair Algorithms for Message Communication
Sergey Gorinsky, Eric J. Friedman, Shane Henderson, and Christoph Jechlitschek
Computer Science and Engineering

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Extending BPEL for Interoperable Pervasive Computing
Gregory Hackmann, Christopher Gill, Christopher Gill, and Gruia-Catalin Roman
Computer Science and Engineering

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Roadmap Analysis of Protein-Protein Interactions. Master's Thesis, August 2007
Brian C. Haynes
Computer Science and Engineering

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Fair Efficiency, or Low Average Delay without Starvation
Christoph Jechlitschek and Sergey Gorinsky
Computer Science and Engineering

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Link Layer Support For Unified Radio Power Management in Wireless Sensor Networks, Master's Thesis, May 2007
Kevin Klues
Computer Science and Engineering

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Performance Evaluation for Hybrid Architectures
Praveen Krishnamurthy

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Curing Regular Expressions Matching Algorithms from Insomnia, Amnesia, and Acalulia
Sailesh Kumar, Balakrishnan Chandrasekaran, Jonathan Turner, and George Varghese
Computer Science and Engineering

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HEXA: Compact Data Structures for Faster Packet Processing
Sailesh Kumar, Jonathan Turner, Patrick Crowley, and Michael Mitzenmacher
Computer Science and Engineering

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Gigabit Concept Mining: A Sensitivity Analysis, Masters Thesis, December 2006
Andrew Levine
Computer Science and Engineering

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Proceedings Work-In-Progress Session of the 13th Real-Time and Embedded Technology and Applications Symposium
Chenyang Lu

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Configuring Low Cost Metanetworks on A Shared Substrate
Jing Lu and Jonathan Turner
Computer Science and Engineering

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Byzantine Fault-Tolerant Web Services for n-Tier and Service Oriented Architectures
Sajeeva L. Pallemulle and Kenneth J. Goldman
Computer Science and Engineering

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Perpetual: Byzantine Fault Tolerance for Federated Distributed Applications
Sajeeva L. Pallemulle, Haraldur D. Thorvaldsson, and Kenneth J. Goldman
Computer Science and Engineering

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Lower Bounds on Queuing and Loss at Highly Multiplexed Links
Maxim Podlesny and Sergey Gorinsky
Computer Science and Engineering

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Price of Asynchrony: Queuing under Ideally Smooth Congestion Control
Maxim Podlesny and Sergey Gorinsky
Computer Science and Engineering

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Expression profiling of human donor lungs to understand primary graft dysfunction after lung transplantation
Monika Ray, Sekhar Dharmarajan, Johannes Freudenberg, Weixiong Zhang, and Alexander G. Patterson
Computer Science and Engineering

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DNA repair in incipient Alzheimer's disease
Monika Ray and Weixiong Zhang
Computer Science and Engineering

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Single cell expression profiling reveals major disruption of DNA repair capacity in incipient Alzheimer's Disease
Monika Ray and Weixiong Zhang
Computer Science and Engineering

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Distributed Allocation of Workflow Tasks in MANETs
Rohan Sen, Gruia-Catalin Roman, and Christopher Gill
Computer Science and Engineering

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Implementing Legba: Fine-Grained Memory Protection
Sheffield, Sowell, and Wilson
Computer Science and Engineering

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Splice: A Standardized Peripheral Logic and Interface Creation Engine
Justin Thiel
Computer Science and Engineering

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Splice: A Standardized Peripheral Logic and Interface Creation Engine, Master's Thesis, May 2007
Justin Thiel
Computer Science and Engineering

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Scheduling Induced Bounds and the Verification of Preemptive Real-Time Systems
Terry Tidwell, Christopher Gill, and Venkita Subramonian
Computer Science and Engineering

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Strong Performance Guarantees for Asynchronous Buffered Crossbar Schedulers
Jonathon Turner
Computer Science and Engineering

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Network Access in a Diversified Internet
M. Wilson, F. Kuhns, and J. Turner
Computer Science and Engineering

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Experimental Evaluation of a Coarse-Grained Switch Scheduler
Charlie Wiseman, Jon Turner, Ken Wong, and Brandon Heller
Computer Science and Engineering

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Configurable Component Middleware for Distributed Real-Time Systems with Aperiodic and Periodic Tasks
Yuanfang Zhang, Christopher Gill, and Chenyang Lu
Computer Science and Engineering

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Customizing Component Middleware for Distributed Real-Time Systems with Aperiodic and Periodic Tasks
Yuanfang Zhang, Christopher Gill, and Chenyang Lu
Computer Science and Engineering

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Leveraging EST Evidence to Automatically Predict Alternatively Spliced Genes, Master's Thesis, December 2006
Robert Zimmermann
Computer Science and Engineering

Research from 2006

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Adaptive Embedded Roadmaps for Sensor Networks
Gazihan Alankus, Nuzhet Atay, Chenyang Lu, and Burchan Bayazit
Computer Science and Engineering

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Mixed-Integer Linear Programming Solution to Multi-Robot Task Allocation Problem
Nuzhet Atay and Burchan Bayazit
Computer Science and Engineering

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Perceptually Meaningful Image Editing: Depth
Reynold J. Bailey and Cindy Grimm
Computer Science and Engineering

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The Real Effect of Warm-Cool Colors
Reynold J. Bailey; Cindy M, Grimm; and Chris Davoli
Computer Science and Engineering

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Smooth Key-framing using the Image Plane
Leon Barrett and Cindy Grimm
Computer Science and Engineering

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The Remote-Clique Problem Revisited
Benjamin E. Birnbaum
Computer Science and Engineering

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An Improved Analysis for a Greedy Remote-Clique Algorithm using Factor-Revealing LPs
Benjamin E. Birnbaum and Kenneth J. Goldman
Computer Science and Engineering

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Real-Time Memory Management: Life and Times
Andrew Borg, Andy Wellings, Christopher Gill, and Ron K. Cytron
Computer Science and Engineering

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A Thesis on Sketch-Based Techniques for Mesh Deformation and Editing
Raquel Bujans
Computer Science and Engineering

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Flexible Maximum Urgency First Scheduling for Distributed Real-Time Systems
Yingming Chen and Chenyang Lu
Computer Science and Engineering

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Dynamic Conflict-free Query Scheduling for Wireless Sensor Networks
Octav Chipara, Chenyang Lu, and John Stankovic
Computer Science and Engineering

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Limit Crossing for Decision Problems
Sharlee Climer and Weixiong Zhang
Computer Science and Engineering

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activePDF-Toolk
Washington University in St. Louis Computer Science Engineering Department
Computer Science and Engineering

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Algorithms and Architectures for Network Search Processors
Sarang Dharmapurikar

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Fast Packet Classification Using Bloom Filters
Sarang Dharmapurikar, Haoyu Song, Jonathan Turner, and John Lockwood
Computer Science and Engineering

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Agilla: A Mobile Agent Middleware for Sensor Networks
Chien-Liang Fok, Gruia-Catalin Roman, and Chenyang Lu
Computer Science and Engineering

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Distributed Utilization Control for Real-time Clusters with Load Balancing
Yong Fu, Hongan Wang, Chenyang Lu, and Ramu S. Chandra
Computer Science and Engineering

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Control of Decoherence in Open Quantum Systems
Narayan Ganesan
Computer Science and Engineering

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Feature Detection Using Curvature Maps and the Min-Cut/Max-Flow Graph Cut Algorithm
Timothy Gatzke and Cindy Grimm
Computer Science and Engineering

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A Theory of Load Adjustments and its Implications for Congestion Control
Sergey Gorinsky, Manfred Georg, Maxim Podlesny, and Christoph Jechlitschek
Computer Science and Engineering

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Smooth Surface Reconstruction using Charts for Medical Data
Cindy Grimm and Tao Ju
Computer Science and Engineering

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Sliver: A BPEL Workflow Process Execution Engine for Mobile Devices
Gregory Hackmann, Mart Haitjema, Christopher Gill, and Catalin-Gruia Roman
Computer Science and Engineering

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MobiWork: Mobile Workflow for MANETs
Gregory Hackmann, Rohan Sen, Mart Haitjema, Gruia-Catalin Roman, and Gill
Computer Science and Engineering

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Acceleration of Gapped Alignment in BLASTP Using the Mercury System
Brandon B. Harris
Computer Science and Engineering

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Virtualization for a Network Processor Runtime System
Brandon Heller, Jonathan Turner, John DeHart, and Patrick Crowley
Computer Science and Engineering

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Design and analysis of an accelerated seed generation stage for BLASTP on the Mercury system - Master's Thesis, August 2006
Arpith Jacob
Computer Science and Engineering

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Fair Efficiency, or Low Average Delay without Starvation
Christoph Jechlitschek and Sergey Gorinksky
Computer Science and Engineering

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HAIL: An Algorithm for the Hardware Accelerated Identification of Languages, Master's Thesis, May 2006
Charles M. Kastner
Computer Science and Engineering

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Dynamic Resource Management in a Static Network Operating System
Kevin Klues, Vlado Handziski, David Culler, David Gay, Phillip Levis Levis, Chenyang Lu, and Adam Wolisz
Computer Science and Engineering

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A Unified Architecture for Flexible Radio Power Management in Wireless Sensor Networks
Kevin Klues, Guoliang Xing, and Chenyang Lu
Computer Science and Engineering

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Link Layer Support for Unified Radio Power Management In Wireless Sensor Networks
Kevin Klues, Guoliang Xing, and Chenyang Lu
Computer Science and Engineering

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Towards a Unified Radio Power Management Architecture for Wireless Sensor Networks
Kevin Klues, Guoliang Xing, and Chenyang Lu
Computer Science and Engineering

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Design and Evaluation of a BLAST Ungapped Extension Accelerator, Master's Thesis
Joseph M. Lancaster
Computer Science and Engineering

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Competent Program Evolution, Doctoral Dissertation, December 2006
Moshe Looks
Computer Science and Engineering

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Efficient Mapping of Virtual Networks onto a Shared Substrate
Jing Lu and Jonathan Turner
Computer Science and Engineering

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Acceleration of Profile-HMM Search for Protein Sequences in Reconfigurable Hardware - Master's Thesis, May 2006
Rahul Pratap Maddimsetty
Computer Science and Engineering

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Automatic Application-Specific Customization of Softcore Processor Microarchitecture, Masters Thesis, May 2006
Shobana Padmanabhan
Computer Science and Engineering

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Preserving Performance of Byzantine Fault Tolerant Replica Groups in the Presence of Malicious Clients
Sajeeva L. Pallemulle, Haraldur D. Thorvaldsson, and Kenneth J. Goldman
Computer Science and Engineering

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A Query-Centric Approach to Supporting the Development of Context-Aware Applications for Mobile Ad Hoc Networks, Doctoral Dissertation, August 2006
Jamie Payton
Computer Science and Engineering

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Multimodal Congestion Control for Low Stable-State Queuing
Maxim Podlesny and Sergey Gorinsky
Computer Science and Engineering

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Design Issues of Reserved Delivery Subnetworks, Doctoral Dissertation, May 2006
Ruibiao Qiu
Computer Science and Engineering

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Three Dimensional Panoramic Fast Flourescence Imaging of Cardiac Arryhtymias in the Rabbit Heart
Fujian Qu, Vladimir P. Nikolski, Cindy Grimm, and Igor R. Efimov
Computer Science and Engineering

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Use of gene expression profiling and machine learning to understand and predict primary graft dysfunction
Monika Ray, Sekhar Dharmarajan, Johannes Freudenberg, Weixiong Zhang, and Alexander G. Patterson
Computer Science and Engineering

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A comprehensive analysis of the effect of microarray data
Monika Ray, Johannes Freudenberg, and Weixiong Zhang
Computer Science and Engineering

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Tuple Space Coordination Across Space & Time
Gruia-Catalin Roman, Radu Handorean, and Chenyang Lu
Computer Science and Engineering

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Discovering Functional Modules by Clustering Gene Co-expression Networks
Jianhua Ruan and Weixiong Zhang
Computer Science and Engineering

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Discovering weak community structures in large biological networks
Jianhua Ruan and Weixiong Zhang
Computer Science and Engineering

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Supporting Collaborative Behavior in MANETs using Workflows
Rohan Sen, Gregory Hackmann, Mart Haitjema, Gruia-Catalin Roman, and Gill
Computer Science and Engineering

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CiAN: A Language and Middleware for Collaboration in Ad hoc Networks
Rohan Sen, Gruia-Catalin Roman, and Andrew Frank
Computer Science and Engineering

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Design and Evaluation of Packet Classification Systems, Doctoral Dissertation, December 2006
Haoyu Song
Computer Science and Engineering

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Manifold Learning for Natural Image Sets, Doctoral Dissertation August 2006
Richard Souvenir
Computer Science and Engineering

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Timed Automata Models for Principled Composition of Middleware
Venkita Subramonian

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Reusable Models for Timing and Liveness Analysis of Middleware for Distributed Real-Time and Embedded Systems
Venkita Subramonian, Christopher Gill, Cesar Sanchez, and Henny Sipma
Computer Science and Engineering

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A view-based deformation tool-kit, Master's Thesis, August 2006
Nisha Sudarsanam
Computer Science and Engineering

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The Meta-Theory of Q_0 in the Calculus of Inductive Constructions, Master's Thesis, May 2006
Li-Yang Tan
Computer Science and Engineering

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The Design, Modeling, and Implementation of Group Scheduling for Isolation of Computations from Adversarial Interference
Terry Tidwell, Noah Watkins, Venkita Subramonian, Douglas Niehaus, Armando Gill, and Migliaccio
Computer Science and Engineering

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A Proposed Architecture for the GENI Backbone Platform
Jonathan Turner
Computer Science and Engineering

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Design of a Diversified Network Substrate
Jonathan Turner
Computer Science and Engineering

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Design of Routers for Diversified Networks
Jonathan Turner
Computer Science and Engineering

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Auto-Pipe and the X Language: A Toolset and Language for the Simulation, Analysis, and Synthesis of Heterogeneous Pipelined Architectures, Master's Thesis, August 2006
Eric J. Tyson
Computer Science and Engineering

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Adaptive Quality of Service Control in Distributed Real-Time Embedded Systems
Xiaorui Wang

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Knuth-Bendix Completion with Modern Termination Checking, Master's Thesis, August 2006
Ian Wehrman
Computer Science and Engineering

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Extending Byzantine Fault Tolerance to Replicated Clients
Ian Wehrman, Sajeeva L. Pallemulle, and Kenneth J. Goldman
Computer Science and Engineering

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Using Expressing Sequence Tags to Improve Gene Structure Annotation
Chaochun Wei and Michael R. Brent

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Virtualizing Network Processors
Ben Wun, Jonathan Turner, and Patrick Crowley
Computer Science and Engineering

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Unified Power Management in Wireless Sensor Networks, Doctoral Dissertation, August 2006
Guoliang Xing
Computer Science and Engineering

Research from 2005

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Spatiotemporal Query Strategies for Navigation in Dynamic Sensor Network Environments
Gacihan Alankus, Nuzhet Atay, Chenyang Lu, and O. Burchan Bayazit