Theses and dissertations produced through the Department of Computer Science and Engineering

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Theses/Dissertations from 2025

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Noninvasive Assessment of the Tumor Using cfDNA, Irfan Alahi

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Code Stories for Software Evolution, John Joseph Allen

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Multi-Layer Support for Component-Based Cyber-Physical Systems Applications, Oren Bell

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Advancing Political Science With Machine Learning: A Gaussian Process Approach, Yehu Chen

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Computational Imaging Under Incomplete Information, Weijie Gan

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Tests Without Borders: A Global Approach to Measuring Visualization Literacy, Olivia A. Guess

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Learning From Conditional Data Distributions, jizhou huang

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Predicting Which Genes Will Respond to Transcription Factor Perturbation, Eric L. Jia

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Multimodal Representation Learning for Geospatial Soundscape Mapping, Subash Khanal

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Effective and Efficient Graph Foundation Model, Lecheng Kong

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Towards Fair Sequential Resource Allocation: Algorithmic Designs, Interventions, and Evaluations, Ashwin Kumar

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Understanding and Mitigating Timing Issues in Autonomous Systems, Ao Li

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Towards Secure and Privacy-Preserving Machine Learning Systems, Han Liu

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Advancing Predictive Modeling with Deep Representation Learning on Diverse Clinical Data, Hanyang Liu

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Towards Graph Foundation Models: Few-shot and Zero-shot Learning on Graphs, Hao Liu

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Combining Code Analysis and Pedagogical Guidance: Automated Tools for Teaching Debugging in Introductory Programming, Yana Malysheva

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Computational Complexity of Soundness Verification for Neural Networks, Scott Sirri

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Strategic Reactor Allocation for Deadlock-Free Execution, Jeevan Sivamohan

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Generic FPGA Preprocessing for Astrophysics Instruments in HLS, Qinzhou Song

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Explainable Decision-Making: From Formal Logic to AI Systems with Explainable Behavior, Stylianos Loukas Vasileiou

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Explainable Decision-Making: From Formal Logic to AI Systems with Explainable Behavior, Stylianos Loukas Vasileiou

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Real-time System Availability for Cyber-physical Systems, Jinwen Wang

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Security Protection for Real-Time Cyber-Physical Systems, Yujie Wang

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Partially Supervised Reinforcement Learning for GPS-Denied Navigation, Ethan Weilheimer

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Empirically Exploring the Physical Realizability of Adversarial Examples, Ruoyao Wen

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Trustworthy Autonomy Through Robust Control and Alignment, Junlin Wu

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System Security Foundations for AI-Enabled Systems, Yuhao Wu

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Training Safety Control Filters Using High-dimensional and Un-labeled Data, Yuxuan Yang

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Scaling Quantum Systems: Quantum Networks, Distributed Quantum Computing, and Security, Zebo Yang

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Cyber-Physical Security Through the Lens of AI-Enabled Systems, Zhiyuan Yu

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Supporting Programmers Answering the Hard-To-Answer Questions Through the Use of Large Language Models, Haixin Zhou

Theses/Dissertations from 2024

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Application of Machine Learning for Multi-omics Data Integration, Dhoha Abid

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Beyond Measures of Speed & Accuracy: Evaluating Visualization Perception, Reasoning & Decision-Making, Melanie Bancilhon

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Improving Clinical Information Extraction from Electronic Health Records: Leveraging Large Language Models and Evaluating Their Outputs, KRITI BHATTARAI

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Reimagining the Machine Vision Pipeline in Cyber Physical Systems for Trustworthiness and Efficiency, Adith Boloor

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Reimagining the Machine Vision Pipeline in Cyber Physical Systems for Trustworthiness and Efficiency, Adith Boloor

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Learning and planning in stochastic interactive environments with the presence of sparse dependence structures, Zihao Deng

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Improving and Modeling Heterogeneous Streaming Computation, Clayton Faber

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A Distributed and Hybrid AI-Based Security Framework for 5G Real-time Applications, Ali Ghubaish

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Tree Recovery by Dynamic Programming, Gustavo Alberto Gratacos

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Towards Building a Reliable Human-Machine Partnership: A Visual Analytics Approach, Sunwoo Jennifer Ha

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Work-Stealing Scheduler for Parallel Cache-Adaptive Algorithms, Chuqi Jiang

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Multimodal Representation Learning Frameworks for Modeling Progression and Heterogeneity in Alzheimer’s Disease, Sayantan Kumar

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Multimodal Representation Learning Frameworks for Modeling Progression and Heterogeneity in Alzheimer’s Disease, Sayantan Kumar

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Towards Verified Vision-Based Neural Network Controllers for Autonomous Lane-Following, Xinhang Ma

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Experimental Design for Scientific Discovery, Quan Minh Nguyen

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An Attention LSTM U-Net Model for Drosophila Melanogaster Heart Tube Segmentation, Xiangping Ouyang

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Schedulability Analysis of Multi-Phase Limited-Preemption Tasks, Benjamin Standaert

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Improved Models of Elastic Scheduling, Marion Baumli Sudvarg

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Coding for Decentralized Systems and Forensic 3D Fingerprinting, Canran Wang