Author's Department/Program
Biology and Biomedical Sciences: Computational and Systems Biology
Language
English (en)
Date of Award
12-18-2013
Degree Type
Dissertation
Degree Name
Doctor of Philosophy (PhD)
Chair and Committee
Robi D Mitra
Abstract
This thesis describes the conception, design, and development of novel computational tools, theoretical models, and experimental techniques applied to the dissection of molecular factors underlying phenotypic variation. The first part of my work is focused on finding rare genetic variants in pooled DNA samples, leading to the development of a novel set of algorithms, SNPseeker and SPLINTER, applied to next-generation sequencing data. The second part of my work describes the creation of a reporter system for DNA methylation for the purpose of dissecting the genetic contribution of tissue-specific patterns of DNA methylation across the genome. Finally the last part of my work is focused on understanding the basis of stochastic variation in gene expression with a focus on modeling and dissecting the relationship between single-cell protein variance and mean at a genome-wide scale.
Recommended Citation
Vallania, Francesco, "On the Origin of Phenotypic Variation: Novel Technologies to Dissect Molecular Determinants of Phenotype" (2013). All Theses and Dissertations (ETDs). 1201.
https://openscholarship.wustl.edu/etd/1201
Comments
This work is not available online per the author’s request. For access information, please contact digital@wumail.wustl.edu or visit http://digital.wustl.edu/publish/etd-search.html.
Permanent URL: http://dx.doi.org/10.7936/K79S1P12