Date of Award

Summer 8-2022

Author's School

McKelvey School of Engineering

Author's Department

Computer Science & Engineering

Degree Name

Master of Science (MS)

Degree Type



Cryptococcus neoformans is a fungal pathogen that causes cryptococcosis, a disease that kills almost 200,000 people worldwide each year. A unique feature of this deadly yeast is its polysaccharide capsule, which is known to be associated with its virulence. Here, we systematically explore the effects of all possible combinations of 4 capsule-inducing signals on gene expression, cell size, and capsule size. These signals are medium (YPD, DMEM or RPMI), temperature (30°C or 37°C), CO2 (room air or 5%), cAMP (0 mM or 20 mM), and pH buffer (HEPES/no HEPES). We explore the effects of exogenous cAMP at a range of concentrations and of deletions of cAMP pathway genes PKR1, PDE1, and PDE2. We present a computational framework for identifying a set of genes that are putatively associated with capsule induction. In addition, we follow up with experiments to validate and corroborate the hypotheses from the computational analysis in search of new genes that may be involved in capsule growth.


English (en)


Michael Brent

Committee Members

Tamara Doering Jeremy Buhler